Christine Hine
(2002) 'Cyberscience and Social Boundaries: the Implications of
Laboratory Talk on the Internet'
Sociological
Research Online, vol. 7, no. 2,
<http://www.socresonline.org.uk/7/2/hine.html>
To cite articles published in Sociological Research Online, please reference the above information and include paragraph numbers if necessary
Received: 3/11/2000 Accepted: 8/7/2002 Published: 31/08/02
Other understandings about animals, rarely communicated in accounts of laboratory methods, pertained to rats as holistic living creatures. These understandings were communicated informally, and were not validated through rigorous testing. They were part of the everyday life of the laboratory, consisting of various sorts of tacit 'know-how', recipe knowledge and experimental craft that enabled practitioners to deal with the contingency of 'handling' laboratory rats.
scientists themselves create that appearance of impersonality, detachment and universality which sociologists have customarily regarded as literally descriptive of social action and technical belief in science. Gilbert and Mulkay (1980: 270).
Figure 1 Number of postings in protocols archive per year, 1993-2001 |
Figure 2 Number of postings in protocols archive per month in 1996 |
The recognition of trustworthy persons is a necessary component in building and maintaining systems of knowledge, while the bases of that trustworthiness are historically and contextually variable.
Simply chopping the top off a blue 1ml pipette works.in addition to the automatic headers, is unusual in this newsgroup. The majority of messages are signed off with at least a first name, and many authors (199 out of 644 or 30.9% in the sample) include some kind of signature in their postings. These range from a name alone, to the use of a full signature at the end of the message giving contact details, affiliations and qualifications. If we consider authors not identified by name and surname either in header information or in a signature, we are left with only 7.6% of the sample or 49 out of 644 authors remaining anonymous.
HiCould someone help me out with the reaction conditions for Mung bean nuclease? I need to convert a NcoI digested site to blunt ends, but I seem to be losing most of my plasmid...
Some info on reaction times and units of enzyme / ug of DNA would be very helpful!
Thanks in advance...
I can't remember the units I use, but I incubate @ 30 deg. for 35 min, and then 95 deg. for 10 min to incactivate.
Hi FrancoisMung Bean Nuclease (like most other DNA modifying enzymzes it seems) generally does what it wants when it wants. I have had the same problem as you but generally succeed in the end. Routinely I use approx. 5U Mung Bean/ug DNA, leave at RT (25?C) for 1 h, add EDTA to 10mM and heat to 68?C for 10 min. I don't know if this is the correct method (!!) but it has worked for me in the past.
Good luck
Don
It is good idea to titer the amount of mung Bean nuclease one uses in the reaction since it has a tendancy to be overzealous in its activity when excess enzyme is around. I used it to make a blunt end and it resulted in clones with a variety of different termini when sequenced.I just transformed with ligations from several rxns with diffrent amounts of nuclease and sequenced several clones, many were diffrent but I got the one I wanted!
Anthony Williams Ph.D
I've been using [brand name] DNA preps for years. The quality is great: as everyone who's used them knows, though the yield is at best inconsistent. At random intervals, and for no apparent reason, there will be absolutely no DNA produced. I've been willing to deal with that when I was getting 5 out of 6, or whatever, with good yields; with important DNA, I'd always run duplicates to be reasonably sure of getting something.In the last two days, I've run 10 [brand name] DNA preps - 8 midi-preps, two maxi-preps - and got one (1) with detectable DNA. Meanwhile two identical cultures, run on a different company's resin, gave 160 ug and 175 ug of DNA from 200 ml bugs (low copy-number plasmid.
One out of ten is not acceptable. Over the years I've gone around and around with [brand name] reps. I've tried dozens of variations on the protocol, I've tried everything they suggest, I follow the directions exactly, and in spite of it I just spent two days pouring DNA down the sink.
The hell with it. Until I hear from users that the [brand name] preps are reliable, I'm not going to use them any more.
Blowing off steam,
John
It your right to be pissed but it might be more productive to find a source of the problem in your protocol. Unless no one else uses your reagents I'd start with finding a dumbass with hands growing out his/her rear end that used the kit before - every place has at least one. Like last week suddenly [brand name] kit suddenly stopped sequencing while newly purchased fmol kept on rolling with the same template and primers. Until that is the same schmuck got his hands on it too. Now, if you can't find one.....
Now you can resume being pissed.
I have had low or no yields with [brand name] niniprep spin columns!
HiYep, me too.
We went back to the old [brand name] kit and then started to make our own version (from the original PNAS reference. We can't call it by the original name, but it is the same I reckon. Yields are consistently good, honest.
Full reference at [URL for World Wide Web site]
courtesy of Dr James Waters who has trouble shooted this. P.S. Use TBE in the gel for best results.
Good luck,
Alan
Switch to CsCl...it's really not as labor intensive as everyone thinks. Given your futile preps, it will no doubt save you time and money. And you will never have to worry about the quality of your DNA...CsCl banding is the gold standard, (ever notice what [brand name] compares their preps to?) Brad Staten
The [brand name] maxiprep is definitely inconsistent both with regard to yield and purity. I have the impression that some of the problems relate to the plasmid; certain plasmids (even high copy numbers) don't give high yields with the [brand name] maxiprep. I have also the impression that one should not use the filter tips but should stick to the centrifuge step. Two times now I had no yield using the filter tips, whereas the same prep was fine when using the centrifuge step instead. Lately I am having a lot of trouble with the purity; even multiple phenol/chloroform extractions does not increase purity.Cheers, Robert
Nope. I've gone through debugging of the [brand name] preps a dozen times; in no case have I ever found a clear source of a problem. All the points you mention I've ruled out already - in the past five years or so I've got scores of tips and suggestions and warning from the [brand name] tech representatives and other users, and I'm careful with my reagents and all that.The bottom line is that if the procedure is so fragile that it can't tolerate different phases of the moon, I'm not interested in using it. It's not productive to spend my time fixing [brand name]'s problems. It's productive to get my DNA and do my experiments.
Thanks to everyone who's sent me suggestions, commiserations, and "Hey-that-happened-to-me-too!" comments.
John
BIOSCI promotes communication between professionals in the biological sciences. All postings to the newsgroups should be made in that spirit. While the general public may "listen in" to the discussions, these newsgroups are intended primarily for communications between researchers. There are other forums on Usenet such as sci.bio.misc for the asking and answering of biological questions from lay persons. (<http://www.bio.net>)
There appears to be a clear tension between the allure of a "democratic" analysis which would allow readers to formulate their own understandings of the raw data, and an ethical commitment to protecting the subjects of study from unnecessary exposure. The words of informants may have been presented in a public forum, but it is unlikely that they expected their words to subsequently become fodder for a sociological analysis of scientific discourse online such as presented here. On the other hand, the talk presented here is, I would suggest, not in itself terribly shocking, and its (more?) public exposure in this paper is unlikely to cause particular distress or harm to those concerned. But should I then promote even more public exposure, by directing readers to the original source to examine the phenomenon for themselves?
This discussion is somewhat ironic, since the paper focuses precisely on the implications of the "publicness" of online talk about laboratory practices. My eventual conclusion suggests that no more harm is likely to accrue to participants on the basis of this analysis than from the initial fact of the publicness of their discourse. In this sense, the decision not to consult participants on the use of their data is situated within the context of the analysis developed in the paper, where I conclude that particular discursive practices, rather than the mere fact of publicness, are likely to keep this form of public science talk from threatening the special status of science. My analysis is unlikely to matter sufficiently to the participants in the discussion. The ethical decision taken here is, then, wholly contextual: I have suggested elsewhere (Hine, 2000) that this may be a more useful and sensitive means of making ethical decisions on the use of online data than the application of absolute rules. Finally, many ethical discussions also revolve around the reasonable expectations of speakers as to the uses to which their words might be put. In this case, I can reasonably expect that anyone who reads thus far in the current paper is sociologically inclined, and hence alive to the ethical issues which surround the sociological analysis of public discourse. Consequently, I have decided to leave the question unresolved and abdicate some ethical responsibility to readers: I may or may not have altered identifying details of individuals and the group in this version of the article, and it is for readers to decide for themselves whether to test which I have done so and to consider whether this would make a difference to their reading of the analysis. This decision is made as a contribution to ongoing discussions about the appropriate ethical stance for Internet researchers, within the context of an over-arching belief that nothing in the analysis is likely to be of harm to the participants. Were the subject of discussion to be more personally sensitive to the participants, or my form of analysis more directed at understanding individuals rather than broad patterns of discourse, I might have taken the decision to discuss my analysis more fully with participants, or to withhold direct quotations from the analysis.
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